Index

B

batch_preprocess() (brats_toolkit.preprocessor.Preprocessor method) brats_toolkit.fusionator module brats_toolkit.preprocessor module brats_toolkit.segmentor module brats_toolkit.util module

brats_toolkit.util.docker_functions module brats_toolkit.util.filemanager module brats_toolkit.util.own_itk module brats_toolkit.util.prep_utils module bratsNormalize() (in module brats_toolkit.util.filemanager)

C

clean() (in module brats_toolkit.util.filemanager) completeclean() (in module brats_toolkit.util.filemanager) conversion() (in module brats_toolkit.util.filemanager)

convertLabels() (in module brats_toolkit.util.filemanager) copy_image_info() (in module brats_toolkit.util.own_itk) create_files() (in module brats_toolkit.util.filemanager)

F

fileFinder() (in module brats_toolkit.util.filemanager) fileIterator() (in module brats_toolkit.util.filemanager)

fuse() (brats_toolkit.fusionator.Fusionator method) Fusionator (class in brats_toolkit.fusionator)

G

get_itk_array() (in module brats_toolkit.util.own_itk)

get_itk_data() (in module brats_toolkit.util.own_itk) get_itk_image() (in module brats_toolkit.util.own_itk)

L

load_arr_from_paths() (in module brats_toolkit.util.own_itk)

loadGT() (in module brats_toolkit.util.filemanager)

M

make_itk_image() (in module brats_toolkit.util.own_itk) module brats_toolkit.fusionator brats_toolkit.preprocessor brats_toolkit.segmentor brats_toolkit.util brats_toolkit.util.docker_functions brats_toolkit.util.filemanager brats_toolkit.util.own_itk brats_toolkit.util.prep_utils

P

Preprocessor (class in brats_toolkit.preprocessor)

R

read_dicom() (in module brats_toolkit.util.own_itk) reduce_arr_dtype() (in module brats_toolkit.util.own_itk) reduce_filesize() (in module brats_toolkit.util.filemanager)

remove_nii() (in module brats_toolkit.util.filemanager) rename_fla() (in module brats_toolkit.util.filemanager) rename_flair() (in module brats_toolkit.util.filemanager)

S

segment() (brats_toolkit.segmentor.Segmentor method) Segmentor (class in brats_toolkit.segmentor)

single_preprocess() (brats_toolkit.preprocessor.Preprocessor method) start_docker() (in module brats_toolkit.util.docker_functions) stop_docker() (in module brats_toolkit.util.docker_functions)

T

tempFiler() (in module brats_toolkit.util.prep_utils)

touchAndConvert() (in module brats_toolkit.util.filemanager)

U

update_docker() (in module brats_toolkit.util.docker_functions)

V

validate_files() (in module brats_toolkit.util.filemanager)

W

write_itk_image() (in module brats_toolkit.util.own_itk)